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Millikan Sequencing by Label-Free Detection of Nucleotide Incorporation

Award Information

Agency:
Department of Health and Human Services
Branch:
N/A
Award ID:
96286
Program Year/Program:
2010 / SBIR
Agency Tracking Number:
HG005865
Solicitation Year:
N/A
Solicitation Topic Code:
NHGRI
Solicitation Number:
N/A
Small Business Information
CAERUS MOLECULAR DIAGNOSTICS, INC.
465 Fairchild Dr. Suite 226 Mountain View, CA 94043
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Woman-Owned: No
Minority-Owned: No
HUBZone-Owned: No
 
Phase 1
Fiscal Year: 2010
Title: Millikan Sequencing by Label-Free Detection of Nucleotide Incorporation
Agency: HHS
Contract: 1R43HG005865-01
Award Amount: $500,000.00
 

Abstract:

DESCRIPTION (provided by applicant): The feasibility of a label-free technology, Millikan Sequencing, will be evaluated for de novo sequencing of mammalian genomes for under 1,000. This novel sequencing-by-synthesis approach measures the increased charg e as nucleotides are added to DNA templates attached to a tethered bead. Opposing electrical, hydrodynamic and entropic forces will be used to measure the bead displacement, which is a function of the length of DNA attached to the bead. Simultaneous dete ction of an array of millions of beads undergoing chain elongation will allow high-throughput sequencing. Model calculations and preliminary results indicate that this method should enable accurate, long read length and label-free DNA sequencing. The lac k of labels leads to negligible reagent costs while the relatively simple optics leads to a low-cost instrument. Long read lengths will result in low genome assembly cost. The much lower per-bead copy number required compared to the 454 system should enab le amplification options other than emulsion PCR, such as bridge PCR, making initial sample preparation easier and cheaper. Ultimately, the method could be used on single molecules thereby further reducing sample preparation costs. The aims of the propos ed two-year exploratory project are: (1) to demonstrate the ability to sequence DNA using a single tethered bead, and (2) to develop a scheme that would allow simultaneous detection of large bead arrays for high throughput analysis. PUBLIC HEALTH RE LEVANCE: Nucleic acid sequence information is critical to medical research and to basic biological studies. The goal of this project is to develop a DNA sequencing system based on a label-free detection approach, Millikan Sequencing, which is capable of de novo sequencing of mammalian genomes for under 1,000. Such a platform will allow researchers and clinicians to perform the translational research ultimately required to improve human health.

Principal Investigator:

Javier Farinas
6502489357

Business Contact:

Small Business Information at Submission:

CAERUS MOLECULAR DIAGNOSTICS, INC.
CAERUS MOLECULAR DIAGNOSTICS, INC. 1644 KENSINGTON AVE LOS ALTOS, CA -

EIN/Tax ID: 126414992
DUNS: N/A
Number of Employees: N/A
Woman-Owned: No
Minority-Owned: No
HUBZone-Owned: No