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Software Tools for the Systems Biology Knowledgebase (Kbase)

Description:

The Kbase is in a stage of active development and could benefit from complementing software tools. These can include but are not limited to tools for:

  • Development or adaptation of Laboratory Information Management Systems (LIMS) to
  • integrate together different types of experimental biological data such as proteomics,
  • transcriptomics, flux and network data with genomic data.
  • Software to automatically extract biologically relevant information from different databases,
  • such as microarray, proteomic, metabolomic data;
  • Development of web-to-web services for bioinformatic tools.
  • Development of software tools to upload, integrate and analyze biological data in a cloud
  • architecture

Questions – contact John Houghton, john.houghton@science.doe.gov

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