Analysis of Environmental Mycobacterium Ulcerans

Award Information
Agency:
Department of Health and Human Services
Branch
n/a
Amount:
$98,841.00
Award Year:
2007
Program:
SBIR
Phase:
Phase I
Contract:
1R43AI072841-01
Award Id:
85284
Agency Tracking Number:
AI072841
Solicitation Year:
n/a
Solicitation Topic Code:
n/a
Solicitation Number:
n/a
Small Business Information
ATOM SCIENCES, INC., 114 RIDGEWAY CTR, OAK RIDGE, TN, 37830
Hubzone Owned:
N
Minority Owned:
N
Woman Owned:
N
Duns:
048900880
Principal Investigator:
RICHARD HURT
(865) 483-1113
HURT@ATOM-SCI.COM
Business Contact:
() -
copeland@atom-sci.com
Research Institution:
n/a
Abstract
DESCRIPTION (provided by applicant): The aim of this research is to develop a locus-specific DNA amplification process suitable for highly multiplexed detection of pathogenic mycobacteria in environmental samples. Specifically, this project aims to develo p an assay to identify the presence of Mycobacterium ulcerans (MU) in environmental samples to determine the transmission pathway from the environmental to humans. MU is the causative agent responsible for Buruli ulcer, a devastating skin disease present i n several countries. The proposed approach is to create a polymerase chain reaction (PCR) template that contains PCR primer sites that are not present in the target genome but contains a specific sequence in the target genome. This is done by creating two site-specific probes, each one containing one of the PCR primer sites or a complement thereof. These probes anneal to the target DNA at each end of a sequence in the genome that contains only three of the four possible DNA bases. Polymerase is used to extend one of the probes across this void region so that the complement of the void region is created. Then ligase is used to connect this extension product to the other probe, creating the PCR template. This void-extension-ligation (VEL) reaction can b e repeated many times making several copies of the template. PCR is then performed, amplifying the targeted region of the DNA. Because the PCR primers are introduced in the probes, a single set of PCR primers can be used for a large number of targeted sequ ences. Other researchers have shown that a similar process called MARA, which also can use a single set of PCR primers, can be multiplexed successfully for 750 separate targeted sequences across nine DNA samples. The proposed technique is somewhat simpler than MARA and should be even more specific. Specificity and multiplex capability are key features in targeting regions that are putatively unique to M. ulcerans but which, in fact, may exist in related mycobacteria in an environmental sample. In Pha se I, we plan to develop the VEL-PCR method and test it on environmental samples inoculated with M. ulcerans and others inoculated with its closes relative, M. marinum. After sensitivity and specificity have been demonstrated in Phase I, actual samples fro m highly endemic areas will be analyzed. Further development of VEL-PCR will be performed in Phase II to adapt it to the detection of other important pathogens.

* information listed above is at the time of submission.

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