Millikan Sequencing by Label-Free Detection of Nucleotide Incorporation

Award Information
Agency:
Department of Health and Human Services
Branch
n/a
Amount:
$500,000.00
Award Year:
2010
Program:
SBIR
Phase:
Phase I
Contract:
1R43HG005865-01
Award Id:
96286
Agency Tracking Number:
HG005865
Solicitation Year:
n/a
Solicitation Topic Code:
NHGRI
Solicitation Number:
n/a
Small Business Information
CAERUS MOLECULAR DIAGNOSTICS, INC., 1644 KENSINGTON AVE, LOS ALTOS, CA, -
Hubzone Owned:
N
Minority Owned:
N
Woman Owned:
N
Duns:
962338237
Principal Investigator:
JAVIER FARINAS
(650) 248-9357
Business Contact:
() -
Research Institution:
n/a
Abstract
DESCRIPTION (provided by applicant): The feasibility of a label-free technology, Millikan Sequencing, will be evaluated for de novo sequencing of mammalian genomes for under 1,000. This novel sequencing-by-synthesis approach measures the increased charg e as nucleotides are added to DNA templates attached to a tethered bead. Opposing electrical, hydrodynamic and entropic forces will be used to measure the bead displacement, which is a function of the length of DNA attached to the bead. Simultaneous dete ction of an array of millions of beads undergoing chain elongation will allow high-throughput sequencing. Model calculations and preliminary results indicate that this method should enable accurate, long read length and label-free DNA sequencing. The lac k of labels leads to negligible reagent costs while the relatively simple optics leads to a low-cost instrument. Long read lengths will result in low genome assembly cost. The much lower per-bead copy number required compared to the 454 system should enab le amplification options other than emulsion PCR, such as bridge PCR, making initial sample preparation easier and cheaper. Ultimately, the method could be used on single molecules thereby further reducing sample preparation costs. The aims of the propos ed two-year exploratory project are: (1) to demonstrate the ability to sequence DNA using a single tethered bead, and (2) to develop a scheme that would allow simultaneous detection of large bead arrays for high throughput analysis. PUBLIC HEALTH RE LEVANCE: Nucleic acid sequence information is critical to medical research and to basic biological studies. The goal of this project is to develop a DNA sequencing system based on a label-free detection approach, Millikan Sequencing, which is capable of de novo sequencing of mammalian genomes for under 1,000. Such a platform will allow researchers and clinicians to perform the translational research ultimately required to improve human health.

* information listed above is at the time of submission.

Agency Micro-sites


SBA logo

Department of Agriculture logo

Department of Commerce logo

Department of Defense logo

Department of Education logo

Department of Energy logo

Department of Health and Human Services logo

Department of Homeland Security logo

Department of Transportation logo

Enviromental Protection Agency logo

National Aeronautics and Space Administration logo

National Science Foundation logo
US Flag An Official Website of the United States Government