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Array Imaging digital PCR Platform

Award Information
Agency: Department of Health and Human Services
Branch: National Institutes of Health
Contract: 2R44OD023028-03A1
Agency Tracking Number: R44OD023028
Amount: $1,799,695.00
Phase: Phase II
Program: SBIR
Solicitation Topic Code: 100
Solicitation Number: PA15-052
Timeline
Solicitation Year: 2015
Award Year: 2018
Award Start Date (Proposal Award Date): 2018-08-22
Award End Date (Contract End Date): 2021-07-31
Small Business Information
3436 RAMBOW DR
Palo Alto, CA 94306-3638
United States
DUNS: 080013010
HUBZone Owned: No
Woman Owned: No
Socially and Economically Disadvantaged: No
Principal Investigator
 PAUL HUNG
 (510) 703-6887
 paul.hung@combinati.com
Business Contact
 PAUL HUNG
Phone: (510) 703-6887
Email: paul.hung@combinati.com
Research Institution
N/A
Abstract

Abstract
Combinati is looking to bring an integrated Array Imaging digital PCR platform with injection molded
microfluidic consumables from lab to marketplace to accelerate the adoption of dPCR technology. Digital
PCR has drawn attentions in both genomic research and clinical research communities for its ability to
detect rare events (high sensitivity), less prone to inhibition (high specificity), no need for an internal
standard (high precision), and access to well-developed PCR reagents. However, current dPCR instruments
are capital intensive, cost per sample is high, and the workflow is complicated. With successful completion
of our Phase 1 aims, we will continue the following product development effort to bring our platform to
market with the following differentiated features• Smooth transition from qPCR:o Equivalent workflow: The user will add the reagent mix to the consumable, reagentdigitization, thermal cycling, and real-time imaging is vertically integrated into one
instrument.o Cost efficiency:▪ Instrument: The advance in imaging, thermal control and pneumatic controltechnologies allow us to sell the instrument at ~$30k, similar to qPCR instruments.▪ Consumable: The scalable injection molding technology enables low cost per datapoint (andlt;$1).o Open assay chemistry: The reagents will be partitioned in plastic microchambers insteadof proprietary emulsion oil. The user’s qPCR recipe can be directed transitioned to ourdPCR platform.o Automation compatible: The standard plate frame allows the user to automate the dPCRprocess with liquid handlers.
• More robust and consistent data:o Real-time imaging during thermal cycling: By subtracting from background pre-thermalcycling image from the post-thermal cycling image, as well as recording amplificationdynamics of each partition, the user is able to count only partitions showing PCR tominimize false positive calls.o Fixed number of partitions for every data point: Poisson statistics is dependent on thetotal number of partitions. Our consumable will guarantee 20k partitions for each datapoint, unlike ddPCR, which varies between 11k to 19k.o Known volume: Quantification is done by dividing the number of molecules to the totalvolume. The volume of our array will be measured with confocal laser interferometry togive the user precise volume for quantification.Narrative
There are increasing evidences showing that nucleic acids could complement proteins as additional
biomarkers when it comes to disease prevention, prognosis, diagnosis, as well as therapeutics efficacy
monitoring. Combinati is developing a precision nucleic acid quantification platform in the hope to
accelerate the adoption of dPCR technology in the genomic research market, and catalyze its transition
from benchtop to bedside. With the help from this Phase 2 SBIR project, we will deliver an integrated
Array Imaging digital PCR (dPCR) platform from lab to marketplace with the best combination of workflow
easiness, cost/sample, throughput/run and performance/experiment for high sensitivity absolute
quantification of genetic biomarkers, targeting circulating cell-free DNA mutation detection as our
beachhead application (recommended by our scientific collaborator ThermoFisher).

* Information listed above is at the time of submission. *

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